STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PC28Putative LRR receptor-like serine/threonine-protein kinase. (1019 aa)    
Predicted Functional Partners:
ZOSMA_62G00050
E3 ubiquitin-protein ligase KEG.
    
 0.519
A0A0K9Q218
Small nuclear ribonucleoprotein-associated protein.
    
 0.509
ZOSMA_76G00780
Small nuclear ribonucleoprotein G.
    
  0.500
A0A0K9PQQ4
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
  0.499
A0A0K9Q643
Pre-mRNA-splicing factor ini1.
    
  0.493
ZOSMA_22G01380
U2 small nuclear ribonucleoprotein B.
    
  0.440
A0A0K9PZW3
U1 small nuclear ribonucleoprotein A.
    
  0.440
ZOSMA_13G00310
Putative RNA binding protein.
    
  0.440
ZOSMA_15G00590
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
    
 0.428
A0A0K9Q0G2
Sm domain-containing protein.
    
 0.428
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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