STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_27G01290Glutamate--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (570 aa)    
Predicted Functional Partners:
A0A0K9Q274
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.985
ZOSMA_45G00050
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 0.979
ZOSMA_40G00130
60S ribosomal protein L30.
   
 0.979
ZOSMA_30G00020
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 0.979
ZOSMA_29G00730
60S ribosomal protein L30.
   
 0.979
ZOSMA_68G00880
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.975
A0A0K9Q645
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.975
ZOSMA_40G00230
60S ribosomal protein L21, putative, expressed.
   
 0.974
ZOSMA_19G00220
60S ribosomal protein L21, putative, expressed.
   
 0.974
ZOSMA_29G00010
60S ribosomal protein L31.
   
 0.972
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.