STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PFW8Putative Poly(RC)-binding protein. (689 aa)    
Predicted Functional Partners:
ZOSMA_29G00080
Nuclear cap-binding protein subunit 2.
    
 0.704
ZOSMA_2G01400
Nuclear cap-binding protein subunit.
   
 0.701
ZOSMA_25G01500
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.617
ZOSMA_26G01060
DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 
  0.590
ZOSMA_50G01040
Putative Pre-mRNA-processing-splicing factor.
   
   0.573
ZOSMA_98G00080
DNA-directed RNA polymerase II subunit 4.
    
  0.560
A0A0K9PQL7
Uncharacterized protein.
    
  0.560
ZOSMA_52G00360
DNA-directed RNA polymerase subunit 10-like protein.
   
  0.559
A0A0K9PHE3
DNA-directed RNA polymerase subunit 10-like protein.
   
  0.559
A0A0K9PW88
DNA-directed RNA polymerase subunit 10-like protein.
   
  0.559
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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