STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PGP4PseudoU_synth_1 domain-containing protein. (361 aa)    
Predicted Functional Partners:
ZOSMA_95G00210
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.828
ZOSMA_92G00300
Uncharacterized protein.
   
 0.779
ZOSMA_92G00270
Lysine ketoglutarate reductase trans-splicing related 1.
   
 0.779
ZOSMA_79G00120
Lysine ketoglutarate reductase trans-splicing related 1.
   
 0.779
ZOSMA_74G00720
Lysine ketoglutarate reductase trans-splicing related 1.
   
 0.779
ZOSMA_56G00490
Lysine ketoglutarate reductase trans-splicing related 1.
   
 0.779
ZOSMA_56G00480
Uncharacterized protein.
   
 0.779
ZOSMA_36G00510
tRNA pseudouridine synthase B.
   
 0.779
ZOSMA_15G00760
Putative tRNA-pseudouridine synthase.
   
 0.779
ZOSMA_33G00680
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
   0.717
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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