STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PHB1HMG box domain-containing protein. (134 aa)    
Predicted Functional Partners:
ZOSMA_76G00230
Histone deacetylase complex subunit SAP18.
   
 
 0.982
ZOSMA_25G01520
Actin-related protein; Belongs to the actin family.
   
 0.953
A0A0K9PIR7
Uncharacterized protein.
   
 0.953
ZOSMA_27G01460
Uncharacterized protein.
   
 0.927
ZOSMA_13G00560
Histone H2A; Belongs to the histone H2A family.
   
 0.900
ZOSMA_10G00740
Histone H2A; Belongs to the histone H2A family.
   
 0.900
ZOSMA_77G00820
SWI/SNF-related matrix-associated actin-dependent regulator ofchromatin subfamily D member 1.
   
 
 0.893
ZOSMA_8G01930
SWI/SNF-related, matrix-associated, actin-dependent regulatorof chromatin subfamily B member 1.
   
 
 0.882
ZOSMA_55G00470
J domain-containing protein.
   
 
 0.882
ZOSMA_6G02380
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
  0.866
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.