STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PI80Chaperone protein dnaJ. (653 aa)    
Predicted Functional Partners:
ZOSMA_50G01040
Putative Pre-mRNA-processing-splicing factor.
   
 0.994
A0A0K9P541
Putative Translocation protein sec62.
   
 0.993
A0A0K9Q4A7
Putative Translocation protein sec62.
   
 0.993
A0A0K9P374
Elongation factor like protein.
   
 0.983
A0A0K9PU09
Chaperone protein dnaJ.
  
  
0.980
A0A0K9Q179
Putative Pre-mRNA splicing factor.
   
 0.979
A0A0K9PQQ4
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.966
A0A0K9Q218
Small nuclear ribonucleoprotein-associated protein.
   
 0.963
ZOSMA_54G00970
DEAD-box ATP-dependent RNA helicase 22.
   
 0.961
A0A0K9Q6C8
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.961
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
Server load: low (18%) [HD]