ZOSMA_24G00830 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_24G00830

23S rRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (824 aa)

Predicted Functional Partners:

A0A0K9PHV2

0.899

ZOSMA_72G00110

0.895

ZOSMA_68G00180

0.859

ZOSMA_2G03550

0.833

A0A0K9Q208

0.820

ZOSMA_14G00890

0.789

A0A0K9P9L8

0.786

ZOSMA_15G00320

0.782

ZOSMA_34G00380

0.776

A0A0K9PK87

0.764

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P9L8	A0A0K9PHV2	A0A0K9P9L8	A0A0K9PHV2	DEAD-box ATP-dependent RNA helicase 29.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.988
A0A0K9P9L8	A0A0K9Q208	A0A0K9P9L8	A0A0K9Q208	DEAD-box ATP-dependent RNA helicase 29.	Putative WD-repeat protein.	0.898
A0A0K9P9L8	ZOSMA_14G00890	A0A0K9P9L8	A0A0K9PYL5	DEAD-box ATP-dependent RNA helicase 29.	Brix domain-containing protein 1.	0.981
A0A0K9P9L8	ZOSMA_15G00320	A0A0K9P9L8	A0A0K9PUT6	DEAD-box ATP-dependent RNA helicase 29.	Periodic tryptophan protein 2.	0.918
A0A0K9P9L8	ZOSMA_24G00830	A0A0K9P9L8	A0A0K9PII9	DEAD-box ATP-dependent RNA helicase 29.	23S rRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.786
A0A0K9P9L8	ZOSMA_2G03550	A0A0K9P9L8	A0A0K9PB65	DEAD-box ATP-dependent RNA helicase 29.	SWI4 1, Peter Pan-like protein suppressor.	0.985
A0A0K9P9L8	ZOSMA_34G00380	A0A0K9P9L8	A0A0K9P6V9	DEAD-box ATP-dependent RNA helicase 29.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	0.569
A0A0K9P9L8	ZOSMA_68G00180	A0A0K9P9L8	A0A0K9NRM8	DEAD-box ATP-dependent RNA helicase 29.	tRNA (adenine(58)-N(1))-methyltransferase.	0.785
A0A0K9P9L8	ZOSMA_72G00110	A0A0K9P9L8	A0A0K9NPY2	DEAD-box ATP-dependent RNA helicase 29.	Transducin/WD40 repeat-like superfamily protein.	0.905
A0A0K9PHV2	A0A0K9P9L8	A0A0K9PHV2	A0A0K9P9L8	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	DEAD-box ATP-dependent RNA helicase 29.	0.988
A0A0K9PHV2	A0A0K9Q208	A0A0K9PHV2	A0A0K9Q208	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Putative WD-repeat protein.	0.994
A0A0K9PHV2	ZOSMA_14G00890	A0A0K9PHV2	A0A0K9PYL5	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Brix domain-containing protein 1.	0.998
A0A0K9PHV2	ZOSMA_15G00320	A0A0K9PHV2	A0A0K9PUT6	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Periodic tryptophan protein 2.	0.989
A0A0K9PHV2	ZOSMA_24G00830	A0A0K9PHV2	A0A0K9PII9	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	23S rRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.899
A0A0K9PHV2	ZOSMA_2G03550	A0A0K9PHV2	A0A0K9PB65	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	SWI4 1, Peter Pan-like protein suppressor.	0.998
A0A0K9PHV2	ZOSMA_34G00380	A0A0K9PHV2	A0A0K9P6V9	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	0.930
A0A0K9PHV2	ZOSMA_68G00180	A0A0K9PHV2	A0A0K9NRM8	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	tRNA (adenine(58)-N(1))-methyltransferase.	0.928
A0A0K9PHV2	ZOSMA_72G00110	A0A0K9PHV2	A0A0K9NPY2	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	Transducin/WD40 repeat-like superfamily protein.	0.992
A0A0K9PK87	ZOSMA_24G00830	A0A0K9PK87	A0A0K9PII9	Uncharacterized protein.	23S rRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.764
A0A0K9Q208	A0A0K9P9L8	A0A0K9Q208	A0A0K9P9L8	Putative WD-repeat protein.	DEAD-box ATP-dependent RNA helicase 29.	0.898