A0A0K9PLI1 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K9PLI1

Uncharacterized protein. (132 aa)

Predicted Functional Partners:

A0A0K9PL74

0.867

A0A0K9P9J0

0.791

ZOSMA_1G00070

0.791

A0A0K9Q1N3

0.791

ZOSMA_87G00340

0.756

ZOSMA_54G01180

0.756

ZOSMA_52G01300

0.756

ZOSMA_41G01310

0.756

ZOSMA_33G00170

0.756

A0A0K9PWD3

0.756

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P9J0	A0A0K9PL74	A0A0K9P9J0	A0A0K9PL74	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Uncharacterized protein.	0.791
A0A0K9P9J0	A0A0K9PLI1	A0A0K9P9J0	A0A0K9PLI1	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Uncharacterized protein.	0.791
A0A0K9P9J0	A0A0K9PWD3	A0A0K9P9J0	A0A0K9PWD3	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunitA beta isoform.	0.908
A0A0K9P9J0	A0A0K9Q1N3	A0A0K9P9J0	A0A0K9Q1N3	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.546
A0A0K9P9J0	ZOSMA_1G00070	A0A0K9P9J0	A0A0K9PP78	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.546
A0A0K9P9J0	ZOSMA_33G00170	A0A0K9P9J0	A0A0K9P7J3	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Uncharacterized protein.	0.908
A0A0K9P9J0	ZOSMA_41G01310	A0A0K9P9J0	A0A0K9P4Y3	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Vac14_Fab1_bd domain-containing protein.	0.908
A0A0K9P9J0	ZOSMA_52G01300	A0A0K9P9J0	A0A0K9NZU5	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Protein phosphatase 2A regulatory subunit A.	0.908
A0A0K9P9J0	ZOSMA_54G01180	A0A0K9P9J0	A0A0K9NYY4	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Uncharacterized protein.	0.908
A0A0K9P9J0	ZOSMA_87G00340	A0A0K9P9J0	A0A0K9NMI9	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunitA beta isoform.	0.908
A0A0K9PL74	A0A0K9P9J0	A0A0K9PL74	A0A0K9P9J0	Uncharacterized protein.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.791
A0A0K9PL74	A0A0K9PLI1	A0A0K9PL74	A0A0K9PLI1	Uncharacterized protein.	Uncharacterized protein.	0.867
A0A0K9PL74	A0A0K9PWD3	A0A0K9PL74	A0A0K9PWD3	Uncharacterized protein.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunitA beta isoform.	0.756
A0A0K9PL74	A0A0K9Q1N3	A0A0K9PL74	A0A0K9Q1N3	Uncharacterized protein.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.791
A0A0K9PL74	ZOSMA_1G00070	A0A0K9PL74	A0A0K9PP78	Uncharacterized protein.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.791
A0A0K9PL74	ZOSMA_33G00170	A0A0K9PL74	A0A0K9P7J3	Uncharacterized protein.	Uncharacterized protein.	0.756
A0A0K9PL74	ZOSMA_41G01310	A0A0K9PL74	A0A0K9P4Y3	Uncharacterized protein.	Vac14_Fab1_bd domain-containing protein.	0.756
A0A0K9PL74	ZOSMA_52G01300	A0A0K9PL74	A0A0K9NZU5	Uncharacterized protein.	Protein phosphatase 2A regulatory subunit A.	0.756
A0A0K9PL74	ZOSMA_54G01180	A0A0K9PL74	A0A0K9NYY4	Uncharacterized protein.	Uncharacterized protein.	0.756
A0A0K9PL74	ZOSMA_87G00340	A0A0K9PL74	A0A0K9NMI9	Uncharacterized protein.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunitA beta isoform.	0.756

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

15

average node degree:

2.73

avg. local clustering coefficient:

0.859

expected number of edges:

10

PPI enrichment p-value:

0.0848

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004540

Ribonuclease activity

10 of 118

1.88

5.08

9.29e-16

GO:0000287

Magnesium ion binding

10 of 153

1.77

4.42

5.62e-15

GO:0090729

Toxin activity

3 of 7

2.58

2.66

1.09e-05

GO:0005488

Binding

11 of 3124

0.5

0.42

0.00025

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:16381

Mixed, incl. PIN-like domain superfamily, and Positive regulation of biological process

7 of 85

1.87

3.45

3.03e-09

CL:16383

Mixed, incl. PIN-like domain superfamily, and YefM-like superfamily

6 of 66

1.91

3.2

3.54e-08

CL:16397

Mixed, incl. Large family of predicted nucleotide-binding domains, and SpoVT-AbrB domain superfamily

4 of 16

2.35

3.03

1.29e-06

CL:16385

Mixed, incl. PIN-like domain superfamily, and YefM-like superfamily

5 of 53

1.93

2.71

1.02e-06

CL:16399

Mixed, incl. Toxin, and SpoVT-AbrB domain superfamily

3 of 10

2.43

2.29

4.70e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00270

Cysteine and methionine metabolism

10 of 122

1.86

5.14

2.02e-16

map00920

Sulfur metabolism

10 of 123

1.86

5.13

2.02e-16

map01200

Carbon metabolism

10 of 199

1.65

3.88

7.56e-15

map01230

Biosynthesis of amino acids

10 of 240

1.57

3.44

3.51e-14

map01120

Microbial metabolism in diverse environments

10 of 447

1.3

2.18

1.25e-11

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005576

Extracellular region

10 of 366

1.39

2.45

2.05e-11

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-1277

Toxin-antitoxin system

3 of 9

2.47

2.27

5.46e-05

KW-0800

Toxin

3 of 9

2.47

2.27

5.46e-05

KW-0540

Nuclease

3 of 105

1.41

0.82

0.0159

KW-0460

Magnesium

3 of 141

1.28

0.68

0.0279

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01850

PIN domain

5 of 50

1.95

2.63

2.04e-06

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR029060

PIN-like domain superfamily

9 of 88

1.96

4.97

7.90e-14

IPR002716

PIN domain

6 of 75

1.85

2.91

1.40e-07

IPR022907

VapC family

3 of 9

2.47

2.01

0.00018

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (26%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About