ZOSMA_19G00820 protein (Zostera marina) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

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[Homology]

Score

ZOSMA_19G00820

MYB transcription factor. (277 aa)

Predicted Functional Partners:

A0A0K9PFZ9

0.613

ZOSMA_20G00110

0.592

ZOSMA_10G01490

0.554

A0A0K9PH98

0.545

ZOSMA_52G00830

0.539

A0A0K9P2H9

0.513

ZOSMA_24G01040

0.513

ZOSMA_76G01130

0.508

ZOSMA_77G00150

0.508

ZOSMA_64G00280

0.508

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9P2H9	A0A0K9PFZ9	A0A0K9P2H9	A0A0K9PFZ9	Ubiquitin-40S ribosomal protein S27a-1.	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	0.424
A0A0K9P2H9	A0A0K9PH98	A0A0K9P2H9	A0A0K9PH98	Ubiquitin-40S ribosomal protein S27a-1.	Putative Heat shock 70 kDa protein.	0.745
A0A0K9P2H9	ZOSMA_10G01490	A0A0K9P2H9	A0A0K9Q5S6	Ubiquitin-40S ribosomal protein S27a-1.	COP9 signalosome complex subunit 5b.	0.789
A0A0K9P2H9	ZOSMA_19G00820	A0A0K9P2H9	A0A0K9PNF4	Ubiquitin-40S ribosomal protein S27a-1.	MYB transcription factor.	0.513
A0A0K9P2H9	ZOSMA_20G00110	A0A0K9P2H9	A0A0K9PMT1	Ubiquitin-40S ribosomal protein S27a-1.	Interferon-related developmental regulator 2.	0.940
A0A0K9P2H9	ZOSMA_52G00830	A0A0K9P2H9	A0A0K9NXL8	Ubiquitin-40S ribosomal protein S27a-1.	Retinoblastoma-binding protein.	0.967
A0A0K9P2H9	ZOSMA_64G00280	A0A0K9P2H9	A0A0K9NT52	Ubiquitin-40S ribosomal protein S27a-1.	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.405
A0A0K9P2H9	ZOSMA_76G01130	A0A0K9P2H9	A0A0K9NPM0	Ubiquitin-40S ribosomal protein S27a-1.	Stromal 70 kDa heat shock-related protein, chloroplastic; Belongs to the heat shock protein 70 family.	0.405
A0A0K9P2H9	ZOSMA_77G00150	A0A0K9P2H9	A0A0K9NQJ7	Ubiquitin-40S ribosomal protein S27a-1.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.405
A0A0K9PFZ9	A0A0K9P2H9	A0A0K9PFZ9	A0A0K9P2H9	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	Ubiquitin-40S ribosomal protein S27a-1.	0.424
A0A0K9PFZ9	A0A0K9PH98	A0A0K9PFZ9	A0A0K9PH98	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	Putative Heat shock 70 kDa protein.	0.999
A0A0K9PFZ9	ZOSMA_10G01490	A0A0K9PFZ9	A0A0K9Q5S6	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	COP9 signalosome complex subunit 5b.	0.428
A0A0K9PFZ9	ZOSMA_19G00820	A0A0K9PFZ9	A0A0K9PNF4	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	MYB transcription factor.	0.613
A0A0K9PFZ9	ZOSMA_24G01040	A0A0K9PFZ9	A0A0K9PGJ4	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	Ubiquitin-40S ribosomal protein S27a.	0.424
A0A0K9PFZ9	ZOSMA_64G00280	A0A0K9PFZ9	A0A0K9NT52	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.804
A0A0K9PFZ9	ZOSMA_76G01130	A0A0K9PFZ9	A0A0K9NPM0	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	Stromal 70 kDa heat shock-related protein, chloroplastic; Belongs to the heat shock protein 70 family.	0.805
A0A0K9PFZ9	ZOSMA_77G00150	A0A0K9PFZ9	A0A0K9NQJ7	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.804
A0A0K9PH98	A0A0K9P2H9	A0A0K9PH98	A0A0K9P2H9	Putative Heat shock 70 kDa protein.	Ubiquitin-40S ribosomal protein S27a-1.	0.745
A0A0K9PH98	A0A0K9PFZ9	A0A0K9PH98	A0A0K9PFZ9	Putative Heat shock 70 kDa protein.	Luminal-binding protein 4; Belongs to the heat shock protein 70 family.	0.999
A0A0K9PH98	ZOSMA_19G00820	A0A0K9PH98	A0A0K9PNF4	Putative Heat shock 70 kDa protein.	MYB transcription factor.	0.545

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.966

expected number of edges:

21

PPI enrichment p-value:

0.000804

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

7 of 107

1.23

1.39

1.72e-05

GO:0010467

Gene expression

9 of 201

1.07

1.21

2.67e-06

GO:0061077

Chaperone-mediated protein folding

2 of 2

2.42

1.18

0.0068

GO:0032978

Protein insertion into membrane from inner side

2 of 2

2.42

1.18

0.0068

GO:0022417

Protein maturation by protein folding

2 of 2

2.42

1.18

0.0068

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 51

1.55

2.33

1.66e-07

GO:0019843

rRNA binding

4 of 39

1.43

1.1

0.0025

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 61

1.48

2.2

1.18e-07

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:112

Ribosome

7 of 59

1.49

2.14

3.38e-07

CL:115

Ribosome

6 of 52

1.48

2.02

1.08e-06

CL:97

Ribosome, and Ribonucleoside triphosphate biosynthetic process

8 of 102

1.31

1.77

3.38e-07

CL:118

Ribosome

5 of 47

1.44

1.65

2.86e-05

CL:120

rRNA-binding, and Structural constituent of ribosome

4 of 36

1.46

1.37

0.00039

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dao03010

Ribosome

7 of 53

1.54

2.43

3.53e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 50

1.56

2.44

6.41e-08

GOCC:0044391

Ribosomal subunit

4 of 26

1.6

1.59

0.00019

GOCC:0022626

Cytosolic ribosome

3 of 21

1.57

1.18

0.0025

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 10

1.72

0.82

0.0240

GOCC:0015934

Large ribosomal subunit

2 of 13

1.6

0.73

0.0341

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 62

1.47

2.14

2.06e-07

KW-0699

rRNA-binding

4 of 37

1.45

1.28

0.00073

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00935

Outer membrane protein (OmpH-like)

2 of 2

2.42

1.14

0.0081

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