STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PNF5F-box/kelch-repeat protein. (433 aa)    
Predicted Functional Partners:
ZOSMA_49G00550
Putative Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.534
ZOSMA_69G00130
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
     
 0.470
ZOSMA_74G00480
Putative Cullin-1; Belongs to the cullin family.
    
 0.424
ZOSMA_40G00670
RING-box protein.
    
 0.424
ZOSMA_40G00680
RING-box protein 1a.
    
 0.424
A0A0K9P7F5
Cullin-3B; Belongs to the cullin family.
    
 0.424
ZOSMA_28G00730
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.424
ZOSMA_28G00720
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.424
A0A0K9PYW3
Cullin-3B; Belongs to the cullin family.
    
 0.424
A0A0K9Q271
Putative Cullin-1; Belongs to the cullin family.
    
 0.424
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.