STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PNQ0HTH La-type RNA-binding domain-containing protein. (415 aa)    
Predicted Functional Partners:
A0A0K9PZK7
Pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
   0.550
ZOSMA_27G00130
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.478
A0A0K9P8M0
MI domain-containing protein.
   
 
 0.464
A0A0K9PGT3
MI domain-containing protein.
   
 
 0.464
ZOSMA_16G01520
Eukaryotic translation initiation factor isoform 4G-1.
   
 
 0.439
ZOSMA_17G01170
Eukaryotic translation initiation factor isoform 4G-1.
   
 
 0.439
A0A0K9Q4D6
Nucleolar protein.
   
    0.432
ZOSMA_48G00850
Uncharacterized protein.
   
 
 0.424
ZOSMA_75G00810
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.419
ZOSMA_66G00390
DNA-directed RNA polymerase.
   
   0.419
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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