A0A0K9PNU5 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K9PNU5

MHD1 domain-containing protein. (200 aa)

Predicted Functional Partners:

ZOSMA_6G00250

0.899

ZOSMA_6G00230

0.789

ZOSMA_2G01400

0.531

ZOSMA_29G00080

0.531

ZOSMA_92G00620

0.528

A0A0K9PVU1

0.501

ZOSMA_75G00670

0.494

A0A0K9PQQ4

0.461

ZOSMA_76G00780

0.448

ZOSMA_22G01380

0.448

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PNU5	A0A0K9PQQ4	A0A0K9PNU5	A0A0K9PQQ4	MHD1 domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.461
A0A0K9PNU5	A0A0K9PVU1	A0A0K9PNU5	A0A0K9PVU1	MHD1 domain-containing protein.	Eukaryotic translation initiation factor 2 subunit alpha.	0.501
A0A0K9PNU5	ZOSMA_22G01380	A0A0K9PNU5	A0A0K9PIE8	MHD1 domain-containing protein.	U2 small nuclear ribonucleoprotein B.	0.448
A0A0K9PNU5	ZOSMA_29G00080	A0A0K9PNU5	A0A0K9PDQ8	MHD1 domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.531
A0A0K9PNU5	ZOSMA_2G01400	A0A0K9PNU5	A0A0K9PAN6	MHD1 domain-containing protein.	Nuclear cap-binding protein subunit.	0.531
A0A0K9PNU5	ZOSMA_6G00230	A0A0K9PNU5	A0A0K9NSZ2	MHD1 domain-containing protein.	Uncharacterized protein.	0.789
A0A0K9PNU5	ZOSMA_6G00250	A0A0K9PNU5	A0A0K9NSU5	MHD1 domain-containing protein.	MHD2 domain-containing protein.	0.899
A0A0K9PNU5	ZOSMA_75G00670	A0A0K9PNU5	A0A0K9NPE6	MHD1 domain-containing protein.	RRM domain-containing protein.	0.494
A0A0K9PNU5	ZOSMA_76G00780	A0A0K9PNU5	A0A0K9NR16	MHD1 domain-containing protein.	Small nuclear ribonucleoprotein G.	0.448
A0A0K9PNU5	ZOSMA_92G00620	A0A0K9PNU5	A0A0K9NIX4	MHD1 domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.528
A0A0K9PQQ4	A0A0K9PNU5	A0A0K9PQQ4	A0A0K9PNU5	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	MHD1 domain-containing protein.	0.461
A0A0K9PQQ4	ZOSMA_22G01380	A0A0K9PQQ4	A0A0K9PIE8	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	U2 small nuclear ribonucleoprotein B.	0.985
A0A0K9PQQ4	ZOSMA_29G00080	A0A0K9PQQ4	A0A0K9PDQ8	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit 2.	0.994
A0A0K9PQQ4	ZOSMA_2G01400	A0A0K9PQQ4	A0A0K9PAN6	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit.	0.994
A0A0K9PQQ4	ZOSMA_6G00230	A0A0K9PQQ4	A0A0K9NSZ2	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.461
A0A0K9PQQ4	ZOSMA_6G00250	A0A0K9PQQ4	A0A0K9NSU5	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	MHD2 domain-containing protein.	0.461
A0A0K9PQQ4	ZOSMA_76G00780	A0A0K9PQQ4	A0A0K9NR16	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
A0A0K9PQQ4	ZOSMA_92G00620	A0A0K9PQQ4	A0A0K9NIX4	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.998
A0A0K9PVU1	A0A0K9PNU5	A0A0K9PVU1	A0A0K9PNU5	Eukaryotic translation initiation factor 2 subunit alpha.	MHD1 domain-containing protein.	0.501
A0A0K9PVU1	ZOSMA_6G00230	A0A0K9PVU1	A0A0K9NSZ2	Eukaryotic translation initiation factor 2 subunit alpha.	Uncharacterized protein.	0.501