A0A0K9PPF2 protein (Zostera marina) - STRING interaction network

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second shell of interactors

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Edges:

Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:

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Gene Fusion

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Coexpression

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[Homology]

Score

A0A0K9PPF2

Uncharacterized protein. (230 aa)

Predicted Functional Partners:

ZOSMA_41G00500

0.990

A0A0K9PQL9

0.987

ZOSMA_2G00940

0.978

ZOSMA_58G00110

0.968

ZOSMA_4G00560

0.967

ZOSMA_6G00630

0.960

A0A0K9PQG2

0.960

ZOSMA_2G03090

0.958

A0A0K9PSC3

0.958

A0A0K9PSL1

0.950

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PPF2	A0A0K9PQG2	A0A0K9PPF2	A0A0K9PQG2	Uncharacterized protein.	pH-response regulator protein palA/RIM20.	0.960
A0A0K9PPF2	A0A0K9PQL9	A0A0K9PPF2	A0A0K9PQL9	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A0K9PPF2	A0A0K9PSC3	A0A0K9PPF2	A0A0K9PSC3	Uncharacterized protein.	Charged multivesicular body protein 1b.	0.958
A0A0K9PPF2	A0A0K9PSL1	A0A0K9PPF2	A0A0K9PSL1	Uncharacterized protein.	ALIX_LYPXL_bnd domain-containing protein.	0.950
A0A0K9PPF2	ZOSMA_2G00940	A0A0K9PPF2	A0A0K9PCW9	Uncharacterized protein.	Vacuolar sorting ATPase; Belongs to the AAA ATPase family.	0.978
A0A0K9PPF2	ZOSMA_2G03090	A0A0K9PPF2	A0A0K9PBF4	Uncharacterized protein.	Charged multivesicular body protein 1b.	0.958
A0A0K9PPF2	ZOSMA_41G00500	A0A0K9PPF2	A0A0K9P2D4	Uncharacterized protein.	Charged multivesicular body protein 3.	0.990
A0A0K9PPF2	ZOSMA_4G00560	A0A0K9PPF2	A0A0K9NYG2	Uncharacterized protein.	SNF7 family protein.	0.967
A0A0K9PPF2	ZOSMA_58G00110	A0A0K9PPF2	A0A0K9NX70	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.968
A0A0K9PPF2	ZOSMA_6G00630	A0A0K9PPF2	A0A0K9NQV1	Uncharacterized protein.	pH-response regulator protein palA/RIM20.	0.960
A0A0K9PQG2	A0A0K9PPF2	A0A0K9PQG2	A0A0K9PPF2	pH-response regulator protein palA/RIM20.	Uncharacterized protein.	0.960
A0A0K9PQG2	A0A0K9PQL9	A0A0K9PQG2	A0A0K9PQL9	pH-response regulator protein palA/RIM20.	Uncharacterized protein.	0.465
A0A0K9PQG2	ZOSMA_2G00940	A0A0K9PQG2	A0A0K9PCW9	pH-response regulator protein palA/RIM20.	Vacuolar sorting ATPase; Belongs to the AAA ATPase family.	0.810
A0A0K9PQG2	ZOSMA_41G00500	A0A0K9PQG2	A0A0K9P2D4	pH-response regulator protein palA/RIM20.	Charged multivesicular body protein 3.	0.423
A0A0K9PQG2	ZOSMA_4G00560	A0A0K9PQG2	A0A0K9NYG2	pH-response regulator protein palA/RIM20.	SNF7 family protein.	0.524
A0A0K9PQL9	A0A0K9PPF2	A0A0K9PQL9	A0A0K9PPF2	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A0K9PQL9	A0A0K9PQG2	A0A0K9PQL9	A0A0K9PQG2	Uncharacterized protein.	pH-response regulator protein palA/RIM20.	0.465
A0A0K9PQL9	A0A0K9PSC3	A0A0K9PQL9	A0A0K9PSC3	Uncharacterized protein.	Charged multivesicular body protein 1b.	0.960
A0A0K9PQL9	A0A0K9PSL1	A0A0K9PQL9	A0A0K9PSL1	Uncharacterized protein.	ALIX_LYPXL_bnd domain-containing protein.	0.465
A0A0K9PQL9	ZOSMA_2G00940	A0A0K9PQL9	A0A0K9PCW9	Uncharacterized protein.	Vacuolar sorting ATPase; Belongs to the AAA ATPase family.	0.999

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

44

average node degree:

8

avg. local clustering coefficient:

0.843

expected number of edges:

15

PPI enrichment p-value:

5.57e-10

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042351

De novo GDP-L-fucose biosynthetic process

4 of 5

3.5

4.94

1.19e-09

GO:0009226

Nucleotide-sugar biosynthetic process

5 of 44

2.65

4.68

1.19e-09

GO:1901137

Carbohydrate derivative biosynthetic process

7 of 518

1.73

3.04

6.86e-09

GO:0018130

Heterocycle biosynthetic process

7 of 983

1.45

2.04

4.44e-07

GO:0030656

Regulation of vitamin metabolic process

2 of 6

3.12

1.86

0.00044

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050577

GDP-L-fucose synthase activity

3 of 3

3.6

3.66

2.56e-07

GO:0016853

Isomerase activity

6 of 321

1.87

2.92

1.62e-07

GO:0047918

GDP-mannose 3,5-epimerase activity

2 of 2

3.6

2.0

0.00025

GO:0003824

Catalytic activity

11 of 12906

0.53

0.43

0.00081

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:37836106

(2023) Genome and Transcriptome Analyses of Genes Involved in Ascorbate Biosynthesis in Pepper Indicate Key Genes Related to Fruit Development, Stresses, and Phytohormone Exposures.

2 of 5

3.2

0.9

0.0243

PMID:34179502

(2021) In silico analysis of glycosyltransferase 2 family genes in duckweed (Spirodela polyrhiza) and its role in salt stress tolerance.

2 of 3

3.42

0.9

0.0243

PMID:33328457

(2020) A CCAAT-binding factor, SlNFYA10, negatively regulates ascorbate accumulation by modulating the D-mannoseL-galactose pathway in tomato.

2 of 5

3.2

0.9

0.0243

PMID:32252624

(2020) Genome-wide analysis of Myo-inositol oxygenase gene family in tomato reveals their involvement in ascorbic acid accumulation.

2 of 5

3.2

0.9

0.0243

PMID:25023870

(2014) Annotation of gene function in citrus using gene expression information and co-expression networks.

2 of 3

3.42

0.9

0.0243

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:33170

De novo GDP-L-fucose biosynthetic process, and MobA-like NTP transferase domain

7 of 12

3.36

9.71

1.45e-18

CL:33172

MobA-like NTP transferase domain, and GDP-mannose 3,5-epimerase

3 of 7

3.23

3.26

1.25e-06

CL:33716

Dolichol-phosphate-mannose synthase complex, and alpha-1,3-mannosyltransferase activity

2 of 5

3.2

1.69

0.00091

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00520

Amino sugar and nucleotide sugar metabolism

9 of 297

2.08

6.09

3.02e-16

map00051

Fructose and mannose metabolism

6 of 137

2.24

4.86

3.89e-11

map00510

N-Glycan biosynthesis

2 of 76

2.02

1.14

0.0066

map00053

Ascorbate and aldarate metabolism

2 of 99

1.9

1.06

0.0088

map01100

Metabolic pathways

11 of 6275

0.84

0.92

2.79e-08

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-446219

Synthesis of substrates in N-glycan biosythesis

9 of 58

2.79

10.51

1.20e-21

MAP-446193

Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein

9 of 87

2.61

9.52

1.82e-20

MAP-446203

Asparagine N-linked glycosylation

9 of 344

2.02

5.61

1.96e-15

MAP-6787639

GDP-fucose biosynthesis

4 of 6

3.42

5.53

9.31e-11

MAP-597592

Post-translational protein modification

9 of 1407

1.4

2.38

3.26e-10

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005829

Cytosol

5 of 1060

1.27

0.93

0.0046

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0413

Isomerase

5 of 144

2.14

3.39

7.94e-08

KW-0060

Ascorbate biosynthesis

2 of 3

3.42

2.18

0.00012

KW-0511

Multifunctional enzyme

2 of 22

2.56

1.46

0.0021

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001509

NAD-dependent epimerase/dehydratase

4 of 54

2.47

2.78

5.35e-06

IPR029044

Nucleotide-diphospho-sugar transferases

4 of 152

2.02

1.99

9.85e-05

IPR033890

GDP-mannose 3,5-epimerase

2 of 2

3.6

1.84

0.00050

IPR028614

GDP-L-fucose synthase/GDP-L-colitose synthase

2 of 2

3.6

1.84

0.00050

IPR036291

NAD(P)-binding domain superfamily

5 of 394

1.7

1.81

7.99e-05

(more ...)

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