ZOSMA_19G00620 protein (Zostera marina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZOSMA_19G00620

Uncharacterized protein. (248 aa)

Predicted Functional Partners:

ZOSMA_37G01230

0.774

ZOSMA_2G00320

0.673

ZOSMA_2G00300

0.673

ZOSMA_98G00530

0.624

ZOSMA_14G00890

0.615

A0A0K9Q4B6

0.592

A0A0K9PIX7

0.591

A0A0K9PBT1

0.580

A0A0K9Q275

0.580

ZOSMA_78G00660

0.571

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PBT1	A0A0K9PIX7	A0A0K9PBT1	A0A0K9PIX7	NOP5NT domain-containing protein.	RRM domain-containing protein.	0.724
A0A0K9PBT1	A0A0K9Q275	A0A0K9PBT1	A0A0K9Q275	NOP5NT domain-containing protein.	Nucleolar protein 5.	0.543
A0A0K9PBT1	A0A0K9Q4B6	A0A0K9PBT1	A0A0K9Q4B6	NOP5NT domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.973
A0A0K9PBT1	ZOSMA_14G00890	A0A0K9PBT1	A0A0K9PYL5	NOP5NT domain-containing protein.	Brix domain-containing protein 1.	0.938
A0A0K9PBT1	ZOSMA_19G00620	A0A0K9PBT1	A0A0K9PQG0	NOP5NT domain-containing protein.	Uncharacterized protein.	0.580
A0A0K9PBT1	ZOSMA_2G00300	A0A0K9PBT1	A0A0K9PCS8	NOP5NT domain-containing protein.	Nucleolar protein.	0.997
A0A0K9PBT1	ZOSMA_2G00320	A0A0K9PBT1	A0A0K9PAK6	NOP5NT domain-containing protein.	Nucleolar protein.	0.997
A0A0K9PBT1	ZOSMA_37G01230	A0A0K9PBT1	A0A0K9P7U2	NOP5NT domain-containing protein.	Putative rRNA 2'-O-methyltransferase fibrillarin.	0.999
A0A0K9PBT1	ZOSMA_78G00660	A0A0K9PBT1	A0A0K9NQP7	NOP5NT domain-containing protein.	Ribosome biogenesis GTPase A.	0.889
A0A0K9PBT1	ZOSMA_98G00530	A0A0K9PBT1	A0A0K9NHY0	NOP5NT domain-containing protein.	Putative Pin2-interacting protein x1.	0.699
A0A0K9PIX7	A0A0K9PBT1	A0A0K9PIX7	A0A0K9PBT1	RRM domain-containing protein.	NOP5NT domain-containing protein.	0.724
A0A0K9PIX7	A0A0K9Q275	A0A0K9PIX7	A0A0K9Q275	RRM domain-containing protein.	Nucleolar protein 5.	0.724
A0A0K9PIX7	ZOSMA_14G00890	A0A0K9PIX7	A0A0K9PYL5	RRM domain-containing protein.	Brix domain-containing protein 1.	0.713
A0A0K9PIX7	ZOSMA_19G00620	A0A0K9PIX7	A0A0K9PQG0	RRM domain-containing protein.	Uncharacterized protein.	0.591
A0A0K9PIX7	ZOSMA_78G00660	A0A0K9PIX7	A0A0K9NQP7	RRM domain-containing protein.	Ribosome biogenesis GTPase A.	0.436
A0A0K9PIX7	ZOSMA_98G00530	A0A0K9PIX7	A0A0K9NHY0	RRM domain-containing protein.	Putative Pin2-interacting protein x1.	0.745
A0A0K9Q275	A0A0K9PBT1	A0A0K9Q275	A0A0K9PBT1	Nucleolar protein 5.	NOP5NT domain-containing protein.	0.543
A0A0K9Q275	A0A0K9PIX7	A0A0K9Q275	A0A0K9PIX7	Nucleolar protein 5.	RRM domain-containing protein.	0.724
A0A0K9Q275	A0A0K9Q4B6	A0A0K9Q275	A0A0K9Q4B6	Nucleolar protein 5.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.973
A0A0K9Q275	ZOSMA_14G00890	A0A0K9Q275	A0A0K9PYL5	Nucleolar protein 5.	Brix domain-containing protein 1.	0.938