STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PRM6Putative WD-repeat protein. (386 aa)    
Predicted Functional Partners:
A0A0K9P7A2
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
    0.542
A0A0K9Q2F3
Guanine nucleotide-binding protein subunit beta.
  
   
 0.517
A0A0K9PNQ5
WD-40 repeat-containing protein.
  
    0.496
ZOSMA_94G00280
WD-40 repeat-containing protein.
  
    0.490
A0A0K9Q208
Putative WD-repeat protein.
  
    0.481
ZOSMA_14G00890
Brix domain-containing protein 1.
   
    0.469
ZOSMA_79G00440
Putative Something about silencing protein sas10.
   
    0.467
ZOSMA_33G00680
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
  
  
0.455
ZOSMA_1G00970
WD-repeat protein.
  
    0.447
ZOSMA_30G00710
P21-activated protein kinase-interacting protein 1-like protein.
  
    0.446
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.