STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_18G00460Cobalamin synthesis protein P47K. (451 aa)    
Predicted Functional Partners:
ZOSMA_52G00890
40S ribosomal protein S29.
  
 
 0.700
A0A0K9NXU6
30S ribosomal protein S14, chloroplastic.
  
 
 0.696
ZOSMA_1G02040
Ribosomal protein S14, mitochondrial.
  
 
 0.696
ZOSMA_63G00250
50S ribosomal protein L28.
  
  
 0.667
A0A0K9PCD6
50S ribosomal protein L28.
  
  
 0.667
ZOSMA_22G01040
50S ribosomal protein L33.
  
  
 0.648
ZOSMA_64G00440
Magnesium chelatase subunit chlH.
  
  
 0.634
ZOSMA_91G00910
50S ribosomal protein L31, chloroplastic.
  
  
 0.602
ZOSMA_48G00020
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
   0.566
A0A0K9P6P2
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
   0.566
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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