STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PS57RING/U-box superfamily protein. (317 aa)    
Predicted Functional Partners:
ZOSMA_63G00240
B3 domain-containing transcription factor ABI3.
    
 
 0.605
ZOSMA_62G00050
E3 ubiquitin-protein ligase KEG.
    
 
 0.490
A0A0K9PTP2
Ubiquitin-60S ribosomal protein L40.
    
  0.457
A0A0K9Q4C8
Ubiquitin-60S ribosomal protein L40.
    
  0.457
A0A0K9P2H9
Ubiquitin-40S ribosomal protein S27a-1.
    
  0.431
ZOSMA_24G01040
Ubiquitin-40S ribosomal protein S27a.
    
  0.431
A0A0K9P8I7
Protein TSSC1.
      
 0.428
ZOSMA_52G00460
WD repeat-containing protein DWA1.
      
 0.424
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.