A0A0K9PSC9 protein (Zostera marina) - STRING interaction network

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Score

A0A0K9PSC9

Uncharacterized protein. (168 aa)

Predicted Functional Partners:

ZOSMA_2G01400

0.531

ZOSMA_29G00080

0.531

ZOSMA_92G00620

0.528

A0A0K9PVU1

0.501

ZOSMA_75G00670

0.494

A0A0K9PQQ4

0.461

ZOSMA_76G00780

0.448

ZOSMA_22G01380

0.448

A0A0K9PZW3

0.448

ZOSMA_13G00310

0.448

Your Current Organism:

Zostera marina

NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0K9PQQ4	A0A0K9PSC9	A0A0K9PQQ4	A0A0K9PSC9	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.461
A0A0K9PQQ4	A0A0K9PZW3	A0A0K9PQQ4	A0A0K9PZW3	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein A.	0.985
A0A0K9PQQ4	ZOSMA_13G00310	A0A0K9PQQ4	A0A0K9Q045	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Putative RNA binding protein.	0.985
A0A0K9PQQ4	ZOSMA_22G01380	A0A0K9PQQ4	A0A0K9PIE8	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	U2 small nuclear ribonucleoprotein B.	0.985
A0A0K9PQQ4	ZOSMA_29G00080	A0A0K9PQQ4	A0A0K9PDQ8	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit 2.	0.994
A0A0K9PQQ4	ZOSMA_2G01400	A0A0K9PQQ4	A0A0K9PAN6	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit.	0.994
A0A0K9PQQ4	ZOSMA_76G00780	A0A0K9PQQ4	A0A0K9NR16	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
A0A0K9PQQ4	ZOSMA_92G00620	A0A0K9PQQ4	A0A0K9NIX4	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.998
A0A0K9PSC9	A0A0K9PQQ4	A0A0K9PSC9	A0A0K9PQQ4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.461
A0A0K9PSC9	A0A0K9PVU1	A0A0K9PSC9	A0A0K9PVU1	Uncharacterized protein.	Eukaryotic translation initiation factor 2 subunit alpha.	0.501
A0A0K9PSC9	A0A0K9PZW3	A0A0K9PSC9	A0A0K9PZW3	Uncharacterized protein.	U1 small nuclear ribonucleoprotein A.	0.448
A0A0K9PSC9	ZOSMA_13G00310	A0A0K9PSC9	A0A0K9Q045	Uncharacterized protein.	Putative RNA binding protein.	0.448
A0A0K9PSC9	ZOSMA_22G01380	A0A0K9PSC9	A0A0K9PIE8	Uncharacterized protein.	U2 small nuclear ribonucleoprotein B.	0.448
A0A0K9PSC9	ZOSMA_29G00080	A0A0K9PSC9	A0A0K9PDQ8	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.531
A0A0K9PSC9	ZOSMA_2G01400	A0A0K9PSC9	A0A0K9PAN6	Uncharacterized protein.	Nuclear cap-binding protein subunit.	0.531
A0A0K9PSC9	ZOSMA_75G00670	A0A0K9PSC9	A0A0K9NPE6	Uncharacterized protein.	RRM domain-containing protein.	0.494
A0A0K9PSC9	ZOSMA_76G00780	A0A0K9PSC9	A0A0K9NR16	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.448
A0A0K9PSC9	ZOSMA_92G00620	A0A0K9PSC9	A0A0K9NIX4	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.528
A0A0K9PVU1	A0A0K9PSC9	A0A0K9PVU1	A0A0K9PSC9	Eukaryotic translation initiation factor 2 subunit alpha.	Uncharacterized protein.	0.501
A0A0K9PZW3	A0A0K9PQQ4	A0A0K9PZW3	A0A0K9PQQ4	U1 small nuclear ribonucleoprotein A.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.985