STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PTE8Ubiquitin-protein ligase 1. (3753 aa)    
Predicted Functional Partners:
A0A0K9PTP2
Ubiquitin-60S ribosomal protein L40.
    
 0.864
A0A0K9Q4C8
Ubiquitin-60S ribosomal protein L40.
    
 0.864
ZOSMA_88G00290
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
  
 
 0.838
ZOSMA_49G00310
Ubiquitin-protein ligase 4.
   
 
0.829
A0A0K9PX68
Ubiquitin-protein ligase 4.
   
 
0.829
A0A0K9P2H9
Ubiquitin-40S ribosomal protein S27a-1.
   
 0.706
ZOSMA_24G01040
Ubiquitin-40S ribosomal protein S27a.
   
 0.706
ZOSMA_46G00090
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.698
ZOSMA_65G00960
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.685
ZOSMA_19G01040
Ubiquitin-like domain-containing protein.
   
 0.653
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
Server load: low (18%) [HD]