STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PU29ERI1 exoribonuclease 3. (344 aa)    
Predicted Functional Partners:
A0A0K9PZM4
Putative polyribonucleotide nucleotidyltransferase.
   
 0.661
A0A0K9Q274
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
     
 0.638
ZOSMA_86G00270
Exosome complex exonuclease 1.
   
 0.619
ZOSMA_16G01510
Exosome complex component RRP41.
   
 0.619
ZOSMA_40G00130
60S ribosomal protein L30.
     
 0.580
ZOSMA_29G00730
60S ribosomal protein L30.
     
 0.580
A0A0K9PQJ8
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
    
  0.579
A0A0K9PUT2
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
    
  0.579
A0A0K9PAF2
Uncharacterized protein.
   
 
  0.560
A0A0K9PNT3
Ipi1_N domain-containing protein.
   
 
  0.560
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.