STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_15G00200Putative ELL-associated factor. (328 aa)    
Predicted Functional Partners:
ZOSMA_4G00780
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 
  0.989
ZOSMA_6G01540
Putative Transcription factor IWS1.
   
 
  0.978
ZOSMA_3G02100
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
  0.963
ZOSMA_25G01500
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.957
ZOSMA_26G01060
DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.924
ZOSMA_26G01350
DNA-directed RNA polymerase.
    
  0.924
ZOSMA_92G00660
DNA-directed RNA polymerase.
    
 0.872
A0A0K9PJ07
DNA-directed RNA polymerase.
    
 0.872
A0A0K9PW72
Putative Transcription elongation factor B polypeptide; Belongs to the SKP1 family.
     
 0.867
A0A0K9P3B4
Putative Transcription elongation factor s-II.
    
 0.866
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.