STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_16G01830Uncharacterized protein. (53 aa)    
Predicted Functional Partners:
A0A0K9PZK7
Pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.827
ZOSMA_79G00470
Splicing factor 45.
   
 
 0.826
ZOSMA_48G00850
Uncharacterized protein.
    
  0.702
ZOSMA_44G01210
RNA-binding protein 39.
   
  0.644
A0A0K9PLD3
Uncharacterized protein.
   
 
 0.643
ZOSMA_78G00240
RRM domain-containing protein.
   
 0.595
ZOSMA_57G00450
Uncharacterized protein.
   
 0.595
A0A0K9PXG7
Splicing factor-related.
   
 0.595
A0A0K9PPU0
Cwf21 domain-containing protein.
   
 
  0.594
ZOSMA_75G00730
Uncharacterized protein.
    
 0.464
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.