STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PW64Exo-polygalacturonase, family GH28. (388 aa)    
Predicted Functional Partners:
A0A0K9NZ13
Pectate lyase.
     
 0.674
A0A0K9Q1V2
Pectate lyase.
     
 0.649
ZOSMA_9G00850
Polygalacturonase, family GH28.
  
  
 
0.620
ZOSMA_41G00870
Pectate lyase.
     
 0.611
A0A0K9PVL2
Beta-xylosidase, family GH3.
    
  0.605
ZOSMA_43G00690
Pectate lyase.
     
 0.580
ZOSMA_52G01240
Polygalacturonase, family GH28.
  
  
 
0.577
ZOSMA_25G01080
Beta-xylosidase, family GH3.
    
  0.533
A0A0K9Q0W3
Pectinesterase.
     
 0.532
A0A0K9Q5H0
Pectinesterase.
     
 0.532
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.