STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PWG9Carotenoid isomerase 1. (576 aa)    
Predicted Functional Partners:
ZOSMA_16G00900
Phytoene synthase.
  
 
 0.946
ZOSMA_8G01150
Squalene synthase.
  
 
 0.945
ZOSMA_19G01400
Squalene/phytoene synthase.
  
 
 0.932
ZOSMA_70G00580
Lycopene beta cyclase.
     
 0.878
A0A0K9PPR2
Geranylgeranyl diphosphate reductase.
 
 
 0.855
A0A0K9PH28
Geranylgeranyl diphosphate reductase.
 
 
 0.854
ZOSMA_42G00440
Dehydrogenase/reductase SDR family member.
  
 
 0.811
A0A0K9P0D3
Diacylglycerol acyltransferase 2.
     
 0.807
ZOSMA_25G00370
Homogentisate phytyltransferase.
 
 
 0.804
ZOSMA_16G01160
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.799
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.