STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PWZ6Putative RNA methyltransferase. (281 aa)    
Predicted Functional Partners:
A0A0K9PFR9
Uncharacterized protein.
    
 
 0.793
ZOSMA_37G00060
Ribosomal RNA large subunit methyltransferase F.
    
 
 0.773
ZOSMA_34G00840
Nop domain-containing protein.
    
 
 0.726
ZOSMA_32G00940
RRM domain-containing protein.
    
 
 0.683
A0A0K9PVU8
Uncharacterized protein.
    
 
 0.683
ZOSMA_97G00430
Uncharacterized protein.
    
 
 0.566
A0A0K9PV59
Fip1 domain-containing protein.
    
 
 0.522
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
   0.510
ZOSMA_85G01240
Putative small nuclear ribonucleoprotein F.
    
   0.507
ZOSMA_30G00940
Putative small nuclear ribonucleoprotein F.
    
   0.507
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.