STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_14G00110UPF0020 domain-containing protein. (477 aa)    
Predicted Functional Partners:
ZOSMA_37G00970
Uncharacterized protein.
   
 0.996
ZOSMA_74G01030
Putative WD-repeat protein.
   
    0.900
ZOSMA_33G00680
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
   0.885
ZOSMA_14G00890
Brix domain-containing protein 1.
   
    0.877
ZOSMA_30G00910
Putative U3 small nucleolar ribonucleoprotein imp4.
   
    0.854
ZOSMA_72G00110
Transducin/WD40 repeat-like superfamily protein.
   
  
 0.850
ZOSMA_15G00320
Periodic tryptophan protein 2.
   
    0.850
ZOSMA_30G01140
WD repeat-containing protein.
   
    0.847
ZOSMA_27G00810
U3 small nucleolar RNA-associated protein-like protein.
   
    0.834
A0A0K9PZK7
Pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
   0.834
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.