STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_12G00270Hepatocellular carcinoma-associated antigen 59 family protein,expressed. (299 aa)    
Predicted Functional Partners:
ZOSMA_99G00740
Nkap_C domain-containing protein.
   
 
  0.955
ZOSMA_46G00340
Putative Pre-mRNA-splicing factor syf2.
   
 
 0.955
ZOSMA_5G01670
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.953
ZOSMA_50G01040
Putative Pre-mRNA-processing-splicing factor.
    
 
 0.947
ZOSMA_44G01040
Xap5,circadian timekeeper.
    
  0.924
A0A0K9PYT4
Protein FAM32A-like protein.
   
 
  0.914
ZOSMA_4G01410
Coiled-coil domain containing 12.
   
 
  0.913
ZOSMA_3G00820
Uncharacterized protein.
   
 
 0.912
A0A0K9PPF7
Mediator of RNA polymerase II transcription subunit.
   
  
 0.903
A0A0K9PSL8
Pre-mRNA-splicing factor 38A.
   
  
 0.869
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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