STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9PZL4ATP-dependent RNA helicase DOB1. (1007 aa)    
Predicted Functional Partners:
A0A0K9P8E4
Exosome complex component RRP42.
   
 0.991
A0A0K9PQC5
Putative U3 small nucleolar RNA-associated protein.
   
 0.991
A0A0K9Q208
Putative WD-repeat protein.
   
 0.991
ZOSMA_72G00110
Transducin/WD40 repeat-like superfamily protein.
   
 0.990
ZOSMA_75G00380
Exosome complex exonuclease RRP4.
   
 0.989
ZOSMA_74G01030
Putative WD-repeat protein.
   
 0.988
A0A0K9PCA6
3-5 exoribonuclease CSL4.
   
 0.988
ZOSMA_20G00540
Exosome complex exonuclease RRP40.
   
 0.988
A0A0K9PZM4
Putative polyribonucleotide nucleotidyltransferase.
   
 0.988
ZOSMA_69G00360
Putative Exosome complex exonuclease rrp43.
   
 0.987
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.