STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_11G01170HMG box domain-containing protein. (288 aa)    
Predicted Functional Partners:
ZOSMA_26G01060
DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.712
ZOSMA_55G00100
RuvB-like helicase; Belongs to the RuvB family.
    
 0.697
ZOSMA_25G00160
General transcription factor IIH subunit.
    
 0.684
A0A0K9Q5Z3
INO80 complex subunit C.
    
 0.677
A0A0K9PYY4
Putative RNA polymerase II transcription factor B subunit.
    
 0.671
A0A0K9NSN5
Uncharacterized protein.
    
 0.657
ZOSMA_19G01350
Actin-related protein 9; Belongs to the actin family.
    
 0.657
ZOSMA_69G00650
General transcription factor IIH subunit.
    
 0.655
ZOSMA_25G01520
Actin-related protein; Belongs to the actin family.
   
 0.629
A0A0K9PIR7
Uncharacterized protein.
   
 0.629
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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