STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9Q2L1Splicing factor 3b. (376 aa)    
Predicted Functional Partners:
ZOSMA_53G00560
Putative Splicing factor 3B subunit.
   
 0.997
A0A0K9Q643
Pre-mRNA-splicing factor ini1.
    
 0.997
ZOSMA_14G01160
Pre-mRNA branch site p14-like protein.
    
 0.993
A0A0K9P9P8
Uncharacterized protein.
    
 0.992
A0A0K9P9Q2
Splicing factor 3B subunit.
    
 0.992
ZOSMA_64G00720
Putative Splicing factor 3A subunit.
   
 0.991
ZOSMA_76G00780
Small nuclear ribonucleoprotein G.
    
 0.986
ZOSMA_65G01030
Splicing factor 3A subunit 3, putative, expressed.
    
 0.985
ZOSMA_38G00390
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.984
A0A0K9PZS8
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.984
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.