STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9Q2X8Dipeptide epimerase. (447 aa)    
Predicted Functional Partners:
A0A0K9PQC5
Putative U3 small nucleolar RNA-associated protein.
   
 0.779
ZOSMA_34G00440
Splicing factor 3a, subunit 3.
    
 0.757
A0A0K9PRI4
Nucleolar complex protein 4.
   
  0.711
ZOSMA_79G00440
Putative Something about silencing protein sas10.
   
  0.703
ZOSMA_22G01160
Uncharacterized protein.
   
  0.690
ZOSMA_46G00340
Putative Pre-mRNA-splicing factor syf2.
    
 0.674
A0A0K9Q4D6
Nucleolar protein.
   
  0.672
ZOSMA_40G00710
Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
    
  0.667
ZOSMA_35G00840
Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
    
  0.667
A0A0K9PNU2
U3 small nucleolar RNA-associated protein 25.
   
 0.666
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.