STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9Q371E3 ubiquitin-protein ligase SINAT2. (307 aa)    
Predicted Functional Partners:
ZOSMA_1G00530
Putative Calcyclin-binding protein.
    
 0.913
ZOSMA_57G00260
Transducin family protein / WD-40 repeat family protein.
    
  0.711
ZOSMA_10G00280
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.638
ZOSMA_2G02520
Peroxygenase.
    
   0.566
A0A0K9PES5
Ubiquitin-conjugating enzyme E2 variant 1C.
    
   0.566
ZOSMA_76G00430
Tyrosine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.471
A0A0K9PS23
Tyrosine--tRNA ligase.
      
 0.471
ZOSMA_1G03040
Ubiquitin-conjugating enzyme E2 28; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.431
ZOSMA_38G00510
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.427
A0A0K9PK38
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.427
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.