STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZOSMA_10G00370Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1284 aa)    
Predicted Functional Partners:
ZOSMA_46G00340
Putative Pre-mRNA-splicing factor syf2.
    
 0.998
ZOSMA_6G01130
Pre-mRNA-splicing factor cwc25.
    
 0.996
ZOSMA_5G01670
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.994
A0A0K9PPU0
Cwf21 domain-containing protein.
    
 0.994
A0A0K9PGU6
G patch domain and KOW motifs-containing protein.
   
 0.992
A0A0K9P168
WD_REPEATS_REGION domain-containing protein.
   
 0.989
A0A0K9PFT8
Pre-mRNA splicing factor.
   
 0.989
A0A0K9PUF6
Pre-mRNA splicing factor.
 
 
 0.989
ZOSMA_8G01610
Uncharacterized protein.
   
 0.987
ZOSMA_50G01040
Putative Pre-mRNA-processing-splicing factor.
   
 
 0.987
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.