STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0K9Q619Spermidine/putrescine abc transporter, spermidine/putrescine-bindingprotein. (554 aa)    
Predicted Functional Partners:
ZOSMA_42G00570
DNA repair protein RAD50.
    
 0.881
ZOSMA_85G00540
Protein TRIGALACTOSYLDIACYLGLYCEROL I; Belongs to the MlaE permease family.
     
 0.706
A0A0K9PL54
Acetyl-CoA carboxylase.
     
 0.679
ZOSMA_54G01140
Agmatine deiminase.
     
 0.546
ZOSMA_8G00980
Dihydroxy-acid dehydratase.
    
  0.518
ZOSMA_54G00880
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
  
 0.492
ZOSMA_2G03130
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
  
 0.492
A0A0K9PVP8
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
  
 0.492
A0A0K9NW87
Uncharacterized protein.
     
 0.482
A0A0K9PKB2
Diaminopimelate decarboxylase.
     
 0.472
Your Current Organism:
Zostera marina
NCBI taxonomy Id: 29655
Other names: Z. marina, Zostera marina L.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.