MICPUN_99729 protein (Micromonas commoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MICPUN_99729

TauD domain-containing protein. (453 aa)

Predicted Functional Partners:

ELF4

0.616

MICPUN_55049

0.568

PKS1

0.568

MICPUN_90156

0.516

MICPUN_58240

0.452

MICPUN_106230

0.432

MICPUN_87938

0.432

MICPUN_98139

0.432

MICPUN_97495

0.419

MICPUN_63055

0.419

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELF4	MICPUN_55049	C1EEN4	C1FDJ6	Elf4 domain-containing protein.	Uncharacterized protein.	0.689
ELF4	MICPUN_90156	C1EEN4	C1DZG4	Elf4 domain-containing protein.	Uncharacterized protein.	0.872
ELF4	MICPUN_99729	C1EEN4	C1E2T4	Elf4 domain-containing protein.	TauD domain-containing protein.	0.616
ELF4	PKS1	C1EEN4	C1FE51	Elf4 domain-containing protein.	Modular polyketide synthase type I.	0.689
MICPUN_106230	MICPUN_90156	C1EDP6	C1DZG4	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.991
MICPUN_106230	MICPUN_99729	C1EDP6	C1E2T4	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	TauD domain-containing protein.	0.432
MICPUN_55049	ELF4	C1FDJ6	C1EEN4	Uncharacterized protein.	Elf4 domain-containing protein.	0.689
MICPUN_55049	MICPUN_63055	C1FDJ6	C1FJA7	Uncharacterized protein.	Flavin-containing monooxygenase.	0.696
MICPUN_55049	MICPUN_97495	C1FDJ6	C1E7S5	Uncharacterized protein.	Flavin-containing monooxygenase.	0.696
MICPUN_55049	MICPUN_99729	C1FDJ6	C1E2T4	Uncharacterized protein.	TauD domain-containing protein.	0.568
MICPUN_55049	PKS1	C1FDJ6	C1FE51	Uncharacterized protein.	Modular polyketide synthase type I.	0.982
MICPUN_58240	MICPUN_90156	C1E523	C1DZG4	Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.	Uncharacterized protein.	0.570
MICPUN_58240	MICPUN_99729	C1E523	C1E2T4	Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.	TauD domain-containing protein.	0.452
MICPUN_63055	MICPUN_55049	C1FJA7	C1FDJ6	Flavin-containing monooxygenase.	Uncharacterized protein.	0.696
MICPUN_63055	MICPUN_99729	C1FJA7	C1E2T4	Flavin-containing monooxygenase.	TauD domain-containing protein.	0.419
MICPUN_63055	PKS1	C1FJA7	C1FE51	Flavin-containing monooxygenase.	Modular polyketide synthase type I.	0.696
MICPUN_87938	MICPUN_90156	C1EFT7	C1DZG4	Uncharacterized protein.	Uncharacterized protein.	0.914
MICPUN_87938	MICPUN_99729	C1EFT7	C1E2T4	Uncharacterized protein.	TauD domain-containing protein.	0.432
MICPUN_90156	ELF4	C1DZG4	C1EEN4	Uncharacterized protein.	Elf4 domain-containing protein.	0.872
MICPUN_90156	MICPUN_106230	C1DZG4	C1EDP6	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.991

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About