MICPUN_108455 protein (Micromonas commoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MICPUN_108455

Uncharacterized protein. (290 aa)

Predicted Functional Partners:

MICPUN_59591

0.535

MICPUN_109381

0.534

MICPUN_60855

0.518

MICPUN_101177

0.517

MICPUN_105919

0.508

MICPUN_73241

0.496

MICPUN_54343

0.486

MEX1

0.484

MICPUN_62160

0.466

PSBP2

0.463

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MEX1	MICPUN_101177	C1EHB4	C1E942	Chloroplast maltose exporter family.	Uncharacterized protein.	0.418
MEX1	MICPUN_108455	C1EHB4	C1E8F0	Chloroplast maltose exporter family.	Uncharacterized protein.	0.484
MEX1	MICPUN_109381	C1EHB4	C1EF58	Chloroplast maltose exporter family.	Uncharacterized protein.	0.484
MEX1	MICPUN_59591	C1EHB4	C1E937	Chloroplast maltose exporter family.	ANK_REP_REGION domain-containing protein.	0.491
MEX1	MICPUN_60855	C1EHB4	C1FGF1	Chloroplast maltose exporter family.	HPt domain-containing protein.	0.419
MICPUN_101177	MEX1	C1E942	C1EHB4	Uncharacterized protein.	Chloroplast maltose exporter family.	0.418
MICPUN_101177	MICPUN_105919	C1E942	C1FFJ5	Uncharacterized protein.	Rhodanese domain-containing protein.	0.499
MICPUN_101177	MICPUN_108455	C1E942	C1E8F0	Uncharacterized protein.	Uncharacterized protein.	0.517
MICPUN_101177	MICPUN_109381	C1E942	C1EF58	Uncharacterized protein.	Uncharacterized protein.	0.540
MICPUN_101177	MICPUN_54343	C1E942	C1E7W2	Uncharacterized protein.	Uncharacterized protein.	0.404
MICPUN_101177	MICPUN_59591	C1E942	C1E937	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.540
MICPUN_101177	MICPUN_60855	C1E942	C1FGF1	Uncharacterized protein.	HPt domain-containing protein.	0.532
MICPUN_101177	MICPUN_73241	C1E942	C1E5A2	Uncharacterized protein.	Uncharacterized protein.	0.494
MICPUN_101177	PSBP2	C1E942	C1ED57	Uncharacterized protein.	Oxygen-evolving enhancer PsbP.	0.476
MICPUN_105919	MICPUN_101177	C1FFJ5	C1E942	Rhodanese domain-containing protein.	Uncharacterized protein.	0.499
MICPUN_105919	MICPUN_108455	C1FFJ5	C1E8F0	Rhodanese domain-containing protein.	Uncharacterized protein.	0.508
MICPUN_105919	MICPUN_109381	C1FFJ5	C1EF58	Rhodanese domain-containing protein.	Uncharacterized protein.	0.534
MICPUN_105919	MICPUN_54343	C1FFJ5	C1E7W2	Rhodanese domain-containing protein.	Uncharacterized protein.	0.513
MICPUN_105919	MICPUN_59591	C1FFJ5	C1E937	Rhodanese domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.571
MICPUN_105919	MICPUN_60855	C1FFJ5	C1FGF1	Rhodanese domain-containing protein.	HPt domain-containing protein.	0.519

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2023

Credits

Access

Info

About