STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MICPUN_63812Lycopene beta cyclase. (1447 aa)    
Predicted Functional Partners:
DXS
Transket_pyr domain-containing protein.
   
  
 0.663
FPS
Farnesyl-pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
      
 0.652
GGPS1
Geranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
      
 0.646
MICPUN_98246
Uncharacterized protein.
      
 0.646
PSY1
Phytoene synthase.
      
 0.646
PDS1
Phytoene desaturase.
      
 0.645
PDS2
Phytoene desaturase.
      
 0.645
MICPUN_55458
Amino_oxidase domain-containing protein.
      
 0.629
MICPUN_76186
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
  
 0.613
VDE
Violaxanthin de-epoxidase.
      
 0.602
Your Current Organism:
Micromonas commoda
NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.