STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_0081Tetratricopeptide TPR_4. (408 aa)    
Predicted Functional Partners:
Bpro_0082
Conserved hypothetical protein.
 
     0.926
Bpro_2468
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.883
Bpro_0083
Protein of unknown function DUF899, thioredoxin-like protein.
 
     0.841
Bpro_1368
Protein of unknown function DUF899, thioredoxin-like protein.
 
     0.743
Bpro_2390
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.686
Bpro_4197
Multi-sensor signal transduction histidine kinase.
  
 
 0.652
Bpro_0084
Hypothetical protein.
 
     0.602
Bpro_4823
Multi-sensor signal transduction histidine kinase.
   
 
 0.597
Bpro_2442
2',5' RNA ligase.
  
     0.556
Bpro_2804
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 
 0.538
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.