STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (364 aa)    
Predicted Functional Partners:
Bpro_3222
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.973
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.966
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.956
Bpro_0317
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
    
 0.925
Bpro_2189
Aminotransferase.
    
 0.822
Bpro_1163
Ornithine cyclodeaminase.
     
 0.813
Bpro_0548
Serine--glyoxylate transaminase.
    
 0.809
Bpro_2753
Aminotransferase, class V.
    
 0.809
Bpro_3376
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
  0.806
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
 
 
 0.677
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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