STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_0413Amidase; Belongs to the amidase family. (466 aa)    
Predicted Functional Partners:
Bpro_3376
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
 0.905
Bpro_1624
benzoate-CoA ligase.
   
 
  0.903
Bpro_2983
benzoate-CoA ligase.
   
 
  0.903
Bpro_0598
Putative phenylacetate-CoA ligase.
    
  0.902
Bpro_0128
Benzaldehyde dehydrogenase (NAD+).
   
 0.901
Bpro_4519
Benzaldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
   
 0.901
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 
 0.893
Bpro_4496
4-hydroxyphenylpyruvate dioxygenase.
  
 
  0.812
Bpro_1853
4-hydroxyphenylpyruvate dioxygenase.
  
 
  0.808
Bpro_4213
4-hydroxyphenylpyruvate dioxygenase.
  
 
  0.808
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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