STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_0435Galactarate dehydratase / L-talarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (383 aa)    
Predicted Functional Partners:
Bpro_3421
D-glucarate dehydratase.
 
  
  0.964
Bpro_1862
Mandelate racemase/muconate lactonizing enzyme.
 
  
 
0.929
Bpro_3419
Dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.922
Bpro_3104
Galactarate dehydratase.
  
 
 0.905
Bpro_3103
5-dehydro-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.904
Bpro_0434
Uncharacterized protein UPF0065.
       0.416
Bpro_0661
D-serine deaminase.
  
     0.400
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.