Bpro_0617 protein (Polaromonas sp. JS666) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Bpro_0617

HipA-like protein. (416 aa)

Predicted Functional Partners:

Bpro_0616

0.818

Bpro_1566

0.624

Bpro_0375

0.598

Bpro_0338

0.567

Bpro_4047

0.495

Bpro_1561

0.425

Bpro_3822

0.412

Bpro_0407

0.407

Your Current Organism:

Polaromonas sp. JS666

NCBI taxonomy Id: 296591
Other names: P. sp. JS666

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Bpro_0338	Bpro_0617	Transcriptional regulator, XRE family.	HipA-like protein.	0.567
Bpro_0375	Bpro_0617	Hypothetical protein.	HipA-like protein.	0.598
Bpro_0375	Bpro_1566	Hypothetical protein.	HipA-like protein.	0.598
Bpro_0407	Bpro_0617	Conserved hypothetical protein.	HipA-like protein.	0.407
Bpro_0616	Bpro_0617	Transcriptional regulator, XRE family.	HipA-like protein.	0.818
Bpro_0617	Bpro_0338	HipA-like protein.	Transcriptional regulator, XRE family.	0.567
Bpro_0617	Bpro_0375	HipA-like protein.	Hypothetical protein.	0.598
Bpro_0617	Bpro_0407	HipA-like protein.	Conserved hypothetical protein.	0.407
Bpro_0617	Bpro_0616	HipA-like protein.	Transcriptional regulator, XRE family.	0.818
Bpro_0617	Bpro_1561	HipA-like protein.	Filamentation induced by cAMP protein Fic.	0.425
Bpro_0617	Bpro_1566	HipA-like protein.	HipA-like protein.	0.624
Bpro_0617	Bpro_3822	HipA-like protein.	Hypothetical protein.	0.412
Bpro_0617	Bpro_4047	HipA-like protein.	Response regulator receiver domain protein (CheY-like).	0.495
Bpro_1561	Bpro_0617	Filamentation induced by cAMP protein Fic.	HipA-like protein.	0.425
Bpro_1566	Bpro_0375	HipA-like protein.	Hypothetical protein.	0.598
Bpro_1566	Bpro_0617	HipA-like protein.	HipA-like protein.	0.624
Bpro_3822	Bpro_0617	Hypothetical protein.	HipA-like protein.	0.412
Bpro_3822	Bpro_4047	Hypothetical protein.	Response regulator receiver domain protein (CheY-like).	0.750
Bpro_4047	Bpro_0617	Response regulator receiver domain protein (CheY-like).	HipA-like protein.	0.495
Bpro_4047	Bpro_3822	Response regulator receiver domain protein (CheY-like).	Hypothetical protein.	0.750