STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_0781Type IV pilus assembly protein PilM. (359 aa)    
Predicted Functional Partners:
Bpro_0782
Fimbrial assembly.
 
 
 0.998
Bpro_0785
Type II and III secretion system protein.
 
 
 0.986
Bpro_0783
Pilus assembly protein, PilO.
 
 
 0.983
Bpro_0784
Pilus assembly protein, PilQ.
 
 
 0.978
Bpro_4640
Peptidoglycan-binding LysM.
  
 
   0.850
Bpro_0396
Pilus retraction ATPase PilT.
 
   
 0.837
Bpro_0842
Type II secretion system protein.
 
 
 
 0.835
Bpro_2882
Methylation.
 
   
 0.820
Bpro_0395
Twitching motility protein.
  
  
 0.813
Bpro_2517
Type IV pilus assembly PilZ.
  
   
 0.811
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.