STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_1111Periplasmic sensor signal transduction histidine kinase. (571 aa)    
Predicted Functional Partners:
Bpro_1110
Two component, sigma54 specific, transcriptional regulator, Fis family.
 
 0.988
Bpro_4485
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.925
Bpro_2468
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.885
Bpro_4825
PAS/PAC sensor hybrid histidine kinase.
 
 
0.840
Bpro_1113
Cytochrome c assembly protein.
 
     0.836
Bpro_1136
Response regulator receiver domain protein (CheY-like).
 
 
 0.832
Bpro_1112
Hypothetical protein.
     
 0.824
Bpro_1137
Response regulator receiver domain protein (CheY-like).
 
 
 0.811
Bpro_4465
Adenylate/guanylate cyclase.
 
 
 0.809
Bpro_1109
Negative regulator of AmpC, AmpD.
       0.808
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.