STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_1499Diaminopropionate ammonia-lyase. (410 aa)    
Predicted Functional Partners:
Bpro_1497
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
   0.905
Bpro_1500
Transcriptional regulator, RpiR family.
 
     0.817
Bpro_1498
Amidase, hydantoinase/carbamoylase.
 
  
 0.815
Bpro_0411
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
  
 0.811
Bpro_2527
Acetylornithine deacetylase / acetylornithine deacetylase ArgE, Metallo peptidase, MEROPS family M20A.
  
 0.800
Bpro_3411
Acetylornithine deacetylase / acetylornithine deacetylase ArgE, Metallo peptidase, MEROPS family M20A.
 
  
 0.746
Bpro_0791
Glutamate synthase (NADH) large subunit.
  
 
 0.533
Bpro_1422
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
 
  
 0.496
Bpro_1501
Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.
       0.473
Bpro_2318
Acetolactate synthase, small subunit.
  
  
 0.445
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.