STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_19084,5-dihydroxyphthalate dehydrogenase. (399 aa)    
Predicted Functional Partners:
Bpro_1909
Phthalate 4,5-dioxygenase, reductase subunit.
 
  
 0.980
Bpro_1910
Phthalate 4,5-dioxygenase, oxygenase subunit.
 
  
 0.979
Bpro_1912
4,5-dihydroxyphthalate decarboxylase.
 
  
 0.966
Bpro_2133
Twin-arginine translocation pathway signal.
  
  
 0.916
Bpro_1907
Transcriptional regulator, MarR family.
       0.773
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.608
Bpro_1913
Protein of unknown function DUF6, transmembrane.
 
     0.519
Bpro_1911
Uncharacterized protein UPF0065.
       0.424
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.