Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bpro_1995Twitching motility protein. (401 aa)    
Predicted Functional Partners:
Bpro_0843
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.803
Bpro_0842
Type II secretion system protein.
 
   
 0.801
Bpro_1331
General secretion pathway protein F.
 
   
 0.799
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.782
Bpro_0781
Type IV pilus assembly protein PilM.
  
  
 0.781
Bpro_1993
[LSU ribosomal protein L3P]-glutamine N5-methyltransferase; Belongs to the protein N5-glutamine methyltransferase family.
       0.781
Bpro_1997
Succinyldiaminopimelate aminotransferase apoenzyme.
       0.741
dapE
Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.740
Bpro_0785
Type II and III secretion system protein.
  
  
 0.619
Bpro_1992
ABC transporter related protein.
       0.562
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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