STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_2000Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (294 aa)    
Predicted Functional Partners:
Bpro_3902
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 
 
 0.799
Bpro_3903
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
 
   0.796
Bpro_3901
L-glutamate ABC transporter ATP-binding protein.
 
 
 0.753
Bpro_2001
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
   
   0.494
Bpro_1999
D-amino-acid dehydrogenase.
  
    0.486
Bpro_3132
Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.
 
   0.447
Bpro_0892
Protein of unknown function DUF883, ElaB.
  
     0.440
Bpro_2726
Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.
 
   0.435
Bpro_1389
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
 
   0.426
Bpro_0403
Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.
 
 
 0.407
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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