STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_2018Squalene/phytoene synthase. (296 aa)    
Predicted Functional Partners:
Bpro_2016
UDP-galactopyranose mutase.
 
  
 0.889
Bpro_2017
Farnesyl-diphosphate farnesyltransferase.
 
   
0.789
Bpro_2019
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
Bpro_4826
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.622
Bpro_2020
Extracellular solute-binding protein, family 1.
       0.521
Bpro_1746
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.514
Bpro_1804
Putative membrane protein.
  
 
 0.484
Bpro_2804
NAD-dependent formate dehydrogenase flavoprotein subunit.
     
 0.454
Bpro_0840
Trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.433
Bpro_1829
Membrane protein-like protein.
  
     0.429
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.