STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_2037RND efflux system, outer membrane lipoprotein, NodT. (489 aa)    
Predicted Functional Partners:
Bpro_2036
Hydrophobe/amphiphile efflux-1 HAE1.
 0.995
Bpro_2035
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.990
Bpro_1022
Type I secretion outer membrane protein, TolC.
     
 0.905
Bpro_1664
Type I secretion outer membrane protein, TolC.
     
0.905
Bpro_2283
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.860
Bpro_2282
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.847
Bpro_3428
Hydrophobe/amphiphile efflux-1 HAE1.
 
 0.808
Bpro_2826
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.726
Bpro_3235
Secretion protein HlyD.
 
 
 0.709
Bpro_3429
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.686
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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